Journal Publications

2018: Optical approaches to capture plant dynamics in time, space, and across scales
E. Puttonen, A. Bucksch, A. Zlinszky, N. Pfeifer
Applied Ecology and Environmental Research9, pp. 791pp

2018: Comparing phenotypic variation of root traits in Thai rice (Oryza sativa L.) across growing systems
P. Saengwilai, S. Klinsawang, M. Sangachart, A. Bucksch
Applied Ecology and Environmental Research16(2), pp. 1069-1083

2017: The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology
J. Friesner, S. Assmann, R. Bastow, J. Bailey-Serres, J. Beynon, V. Brendel, C.R. Buell, A. Bucksch, W. Busch, T. Demura, J. Dinneny, C. Doherty, A. Eveland, P. Falter-Braun, M. Gehan, M. Gonzales, E. Grotewold, R. Gutiérrez, U. Kraemer, G. Krouk, S. Ma, R.J. Markelz, M. Megraw, B. Meyers, J. Murray, N. Provart, S. Rhee, R. Smith, E. Spalding, C. Taylor, T. Teal, K. Torii, C. Town, M. Vaughn, R. Vierstra, D. Ware, O. Wilkins, C. Williams, S. Brady
Plant Physiology 175(4), pp. 1499-1509

2017: Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
A. Bucksch, A. Atta-Boateng , A.F. Azihou , D. Battogtokh, A. Baumgartner, B.M. Binder, S. A. Braybrook , C. Chang, V. Coneva, T.J. DeWitt, A.G. Fletcher, M. A. Gehan, D. H. Diaz-Martinez, L. Hong, A. S. Iyer-Pascuzzi, L. L. Klein Laura, S. Leiboff, M. Li, J. P. Lynch, A. Maizel, J. N. Maloof, R. J. C. Markelz, C. C. Martinez, L. A. Miller, W. Mio, W. Palubicki, H. Poorter, C. Pradal, C. A. Price, E. Puttonen, J. B. Reese, R. Rellán-Álvarez, E. P. Spalding, E. E. Sparks, C. N. Topp, J. H. Williams, D. H. Chitwood
Frontiers in Plant Science 8

2017: Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology
M. A. F. Balduzzi, B. M. Binder, A. Bucksch, C. Chang, L. Hong, A. S. Iyer-Pascuzzi, C. Pradal, E. E. Sparks
Frontiers in Plant Science 8

2016: Overcoming the Law of the Hidden. 
A. Bucksch, A. Das, H. Schneider, N. Merchant, J. S. Weitz
Trends in Plant Science 22(2), pp. 117-123

2016: Genome-Wide Association Mapping and Agronomic Impact of Cowpea Root Architecture.
J. Burridge, H. Schneider, B.L. Huynh, P.A. Roberts, A. Bucksch, J. P. Lynch
Theoretical and Applied Genetics 130(2), pp. 419-431

2016: Legume shovelomics: high-throughput phenotyping of common bean (Phaseolus vulgaris L.) and cowpea (Vigna unguiculata susp, unguilata) root architecture in the field.
J. Burridge, C. Jochua, A. Bucksch, J. P. Lynch
Field Crops Research 192, pp. 21-32 

2015: Digital Imaging of Root Traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics
A. Das,  H. Schneider,  J. Burridge,  A. K. Martinez Ascanio,  T. Wojciechowski,  C. N. Topp,  J. P. Lynch,  J. S. Weitz, A.Bucksch (corresponding author)
Plant Methods 11(51)

2014: Image-based high-throughput field phenotyping of crop roots.
A. BuckschJ. Burridge, L. M. York, A. Das, E. Nord, J. S. Weitz, J. P. Lynch
Plant Physiology 
166(2), pp. 470-486

2014: A practical introduction to skeletons for the plant sciences.
A. Bucksch
Applications in Plant Sciences 2(8)

2014: ClearedLeavesDB: an online database of cleared plant leaf image.
A. Das, A. Bucksch, C.A. Price, J.S. Weitz 
Plant Methods 10(8)

2014: The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion.
A. Bucksch, G. Turk, J.S.Weitz 
PLoS One 
9(1), e85585

2014: Breast height diameter estimation in high density airborne LiDAR data.
A. Bucksch, R. Lindenbergh, M.Z.A. Rahman, M.Menenti, 
IEEE Geoscience and Remote Sensing Letters 
11(6), pp. 156-1060

2013: 3-dimensional phenotyping and quantitative trait locus mapping identifies core regions of the rice genome controlling root architecture
Topp, CN, AS Iyer-Pascuzzi, JT Anderson, C-R Lee, PR Zurek, O Symonova, Y Zheng, A Bucksch, Y Milyeko, T Galkovskyi, BT Moore, J Harer, H Edelsbrunner, T Mitchell-Olds, JS Weitz, PN Benfey, 
PNAS 110(18), E1695-E1704

2013: Localized registration of point clouds of botanic trees
A. Bucksch and Kourosh Koshelham
IEEE Geoscience and Remote Sensing Letters  10(3), pp. 631-635

2012: GiA Roots: Software for the High Throughput Analysis of Plant Root System Architecture 
T. Galkovskyi, Y. Mileyko, A. Bucksch, B. Moore, O. Symonova, C.A. Price, C.N. Topp, A.S. Iyer-Pascuzzi, P.R. Zurek, S. Fang, J. Harer, P.N. Benfey, J.S. Weitz
BMC Plant Biology 12(116)

2011: Automated detection of branch dimensions in woody skeletons of fruit tree canopies 
A. Bucksch, S. Fleck
Photogrammetric Engineering & Remote Sensing 77(3), pp. 229-240 

2010: SkelTre - Robust skeleton extraction from imperfect point clouds
A. Bucksch, R. Lindenbergh, M. Menenti
The Visual Computer 26(10), pp. 1283-1300

2008: 3D Laser imaging as a valuable tool to specify changes in breast shape after augmentation mammaplasty
D.L. Esme, A. Bucksch, Werner H. Beekman
Aesthetic Plastic Surgery 33(2), pp. 191-195 

2008: CAMPINO - A skeletonization method for point cloud processing
A. Bucksch and R. Lindenbergh
ISPRS Journal of Photogrammetry and Remote Sensing 63(1), pp. 115-127 

Peer Reviewed Conference Publications

2011: Characterizing tree growth anomaly induced by landslides using LiDAR
K.A. Razak, A. Bucksch, M. Damen, C. van Westen, M. Straatsma, S. de Jong 
2nd World Landslide Forum, 3-9 october 2011, Rome, Italy. 

2009: Skeltre - Fast skeletonization of imperfect point clouds of botanic trees
A. Bucksch, R. Lindenbergh, M. Menenti
3D Object Retrieval Workshop/ Eurographics 2009, Munchen 28.March-3.April 2009 

2009: Automated detection of branch dimensions in woody skeletons of leafless fruit tree canopies
A. Bucksch, S. Fleck
SilviLaser 2009 proceedings, 14.-16. October 2009 Austin,Texas

2009: A new method for individual tree measurement from airborne LiDAR
M.Z.A. Rahman, B.G.H. Gorte & A.K. Bucksch
SilviLaser 2009 proceedings, 14.-16. October 2009 Austin,Texas 

2009: A new method for individual tree delineation and undergrowth removal from high resolution airborne LiDAR
M.Z.A. Rahman, B.G.H. Gorte & A.K. Bucksch
ISPRS Workshop on Laser Scanning 2009, 1.-2. September 2009 Paris, France 

Invited Conference Papers

2007: Error budget of terrestrial laser scanning: Influence of the intensity remission of the scan quality
A. Bucksch, R. Lindenbergh, and J. van Ree
Proceedings of the III International Scientific Congress Geo-Siberia 2007, 23-27 April, Novosibirsk, Vol. I, 2nd part,, Geodesy, Geoinformatics, Cartography, Markscheider, pp. 113-122, ISBN 978-5-87693-229-7 and ISBN 978-5-87693-231-0 

Abstract Reviewed Conference Publications

2013: K. A. Razak, A. Bucksch, M. Straatsma, C. J. Van Westen, R. A. Bakar, S. M. de Jong. High density airborne LiDAR estimation of disrupted trees induced by landslides. IEEE IGARSS 2013, Melbourne, Australia.

2010: Woody biovolume extraction from laser scanned trees
A. Bucksch, S. Fleck, S. Rumpf, P. Rademacher
In Proceedings Silvilaser 2010, 14-17 September 2010, Freiburg Germany. DOWNLOAD

2009: Skeleton-based botanic tree diameter estimation from dense LiDAR data
A. Bucksch, R. Lindenbergh, M. Menenti, M. Z. A. Raman
at Opticts and Photonics 2009, San Diego(CA). In Lidar Remote Sensing for Environmental Monitoring X, edited by Upendra N. Singh, Proceedings of SPIE Vol. 7460 (SPIE, Bellingham, WA 2009) 746007. 

2009: Structural monitoring of Tunnels using terrestrial laser scanning
R. Lindenbergh, L. Uchanski, A. Bucksch, R. van Gosliga
Reports of Geodesy, Special Issue of the IX Konferencji naukowo-technicznej "Aktualne Problemy w Geodezji Inżynieryjnej”, 27./28. March 2009 in Warsawa 

2009: Applications for point cloud skeletonization in forestry and agriculture
A. Bucksch, R. Lindenbergh
Reports of Geodesy, Special Issue of the IX Konferencji naukowo-technicznej "Aktualne Problemy w Geodezji Inżynieryjnej”, 27./28. March 2009 in Warsawa 

2007: Error budget of terrestrial laser scanning: Influence of the incidence angle on the scan quality
S. Soudarissanane, J. van Ree, A. Bucksch and R. Lindenbergh,
Proceedings 3D-NordOst, 10. Anwendungsbezogener Workshop zur Erfassung, Modellierung, Verarbeitung und Auswertung von 3D-Daten, Berlin, 06./07. December 2007

2007: 3D Buildings modeling Based on a combination of techniques and methodologies
G. Pop, A. Bucksch, B.G.H. Gorte
XXI CIPA International Symposium, 1-6 October 2007,Athens, Greece p. 1-5 

2007: Combining modern techniques for urban 3D modeling
G. Pop, A. Bucksch
IEEE International Geoscience and Remote Sensing Symposium pp. 1-4, 23- 27 July 2007, Barcelona, Spain.

2006: Skeletonization and segmentation of point clouds using octrees and graph theory
A. Bucksch, H. Appel van Wageningen
ISPRS Symposium: Image Engineering and Vision
Metrology Vol. XXXVI. ISPRS Commission V Symposium (pp. 1-6). Dresden: Dresden University of Technology.


2017: The phenotypic spectrum of crop roots
P. Pietrzyk, J. Burridge, N. Klepp, J. Miller, J.P. Lynch, A. Bucksch
Poster at the "Plant Biology 2017", Hololulu, AL, USA, June 23.-29. 2017. 

2017: Hyphal Network Formation in Neurospora crassa
E. Krach, Z. Deng, A. Bucksch, L. Mao, J. Arnold
Poster at the "Mycological Society Of America Meeting 2017", Athens, GA, USA, June 16.-19. 2017. 

2017: Automated phenotyping of root hair traits from microscopy images
P. Pietrzyk, C. Chutoe, P. Saengwilai, A. Bucksch
Poster at the "CROPS 2017", Huntsville, AL, USA, June 5.-8. 2017. 

2017: Linking Root and Shoot: Traits and trade-offs in low nutrient stress tolerance of cultivated sunflower
A.A. Temme, K.L. Kerr, R.R. Masalia, A. Bucksch, J.M. Burke, L.A. Donovan
Poster at the "CROPS 2017", Huntsville, AL, USA, June 5.-8. 2017. 

2016: Investigating the molecular, physiological, and architectural changes that underlie grafting-induced vigor
M.H. Frank, D.H. Chitwood, A. Bucksch
Poster at the "Plant Center Retreat 2016", Helen, GA, USA, October 27./28. 2016.

2016: Digital Imaging of Root Traits (DIRT) – An online high-throughput phenotyping platform for analyzing root images
A. Das, H. Schneider, J.P. Lynch, J.S. Lynch, A. Bucksch
Poster at the "Maize Genetics Conference", Jacksonville, FL, USA. March 17-20.

2016:Cowpea root architecture has agronomic impact
J. Burridge, H. Schneider, B.L. Huynh, P. Roberts, A. Bucksch, J.P. Lynch
Poster at the Pan-African Grain Legume & World Cowpea Conference. Livingstone, Zambia. February 27 - March 4.

2014: Phenotypic variation of root architectural, morphological and anatomical traits of Thai rice (Oryza sativa)
M. Sangachart, A. Wannaro, S. Satarn, S. Jaruwatee, A. Bucksch, P. Saengwilai
Poster at the "Symposium on Frontier Research in Biodiversity and Agricultural Resources", Bangkok, Thailand,  November  6-7.

2014: Digital Imaging of Root Traits (DIRT) – An online high-throughput phenotyping platform for analysis of root images
A. Das, J. S. Weitz, A.Bucksch
Poster at the "School of Biology Retreat 2014", Helen,GA (USA), September 7-8, 2014 

2014: Towards a unified framework for analyzing bacteria genomes(2nd Runner-Up honors)
C. Wigington, A.Bucksch, J. S. Weitz
Poster at the "School of Biology Retreat 2014", Helen,GA (USA), September 7-8, 2014 

2014: Computing skeletons of plant networks for a sustainable society
A.Bucksch, J. S. Weitz
Poster at the "Gordon Conference in Image Science", Boston,MA (USA), June 8-13, 2014 

2013: Infrastructure for managing and analyzing biological networks derived from collections of plant images
A. Das, A.Bucksch, J. S. Weitz
Poster at the "1st Workshop on Big Data Research and Development", Atlanta, USA (USA), April 15, 2013

2012: SoLID :  An Online Community Database of Leaf Images
A. Das, C. A. Price, A.Bucksch, J. S. Weitz
Poster at the "The Society for Mathematical Biology Annual Meeting and Conference", Knoxville,TN (USA), July 25-28, 2012

2011: DynBio: An Educational Application to Facilitate the Instruction of Mathematical Modeling in Biology
K. Knipe , A. Bucksch , J. S. Weitz
Poster at the "8th International Conference on Bioinformatics", Atlanta,GA (USA), 10.-12. November 2011

2004: A system for recording 3D information with applications in the measurement of plant structure
T. Mangoldt , W. Kurth , A. Bucksch , P. Wernecke , W. Diepenbrock
Poster at the "4th International Workshop on Functional-Structural Plant Models" (FSPM04), Montpellier (France), 7.-11. June 2004.

Other Publications

2017:  Morphological Plant Modeling: Unleashing geometric and topologic potential within the plant sciences,
A. Bucksch, D. Chitwood. Publisher: Frontiers in Plant Science, ISBN 978-2-88945-297-2.

2011: Revealing the skeleton from imperfect point clouds
A. Bucksch
PhD Thesis at TU Delft. Advisers: Roderik Lindenbergh and Massimo Menenti. Publisher: Dr.Hut, Munich, 2011.  ISBN 978-3-86853-877-9. 

2009: Technical Report - Scanning of the Interactive Science Centre Garden
A. Bucksch, R. Lindenbergh, J. Gravesteijn, E. Verbree and B. G. H. Gorte
Science Centre TU Delft 

2008: Technical Report - FLI-MAP data possibilities for forest inventory
A. Bucksch, B. G. H. Gorte, M.Z.A. Rahman
ICT Dienst Rijkswaterstaat

2006: 3D MODEL GENERATION WITH LASER SCANNERS - Approaches towards the improvement of CFD input data
A. Bucksch, A. Kagkaras
Leonardo Times, June 2006 

2005: Development of an integrated algorithm for surface reconstruction and point reduction in point clouds (in german)
A. Bucksch
Master Thesis at BTU Cottbus. Adviser: Winfried Kurth, February 2005