Publications

DIRT/µ–Automated extraction of root hair traits using combinatorial optimization
P Pietrzyk, N Phan-Udom, C Chutoe, L Pingault, A Roy, ..., A Bucksch
2024
Non-destructive underground fiber Bragg grating sensing system with ResNet prediction for root phenotyping
S Binder, K Hossain, A Bucksch, M Fok
2024
The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection
D Kawa, B Thiombiano, MZ Shimels, T Taylor, A Walmsley, HE Vahldick, ...
2024
The genomic basis of nitrogen utilization efficiency and trait plasticity to improve nutrient stress tolerance in cultivated sunflower
AA Temme, KL Kerr, KM Nolting, EL Dittmar, RR Masalia, AK Bucksch, ...
2024
CyVerse: Cyberinfrastructure for open science
TL Swetnam, PB Antin, R Bartelme, A Bucksch, D Camhy, G Chism, I Choi, ...
2024
Fiber Bragg grating based sensing system for non-destructive root phenotyping using ResNet prediction
S Binder, K Hossain, A Bucksch, M Fok
2024
Increasing racial diversity in the North American Plant Phenotyping Network through conference participation support
D LeBauer, A Bucksch, J Clarke, J Potts, S Roy
2023
Three‐dimensional phenotyping of peach tree‐crown architecture utilizing terrestrial laser scanning
J Knapp‐Wilson, R Bohn Reckziegel, S Thapa Magar, A Bucksch, ...
2023
Comparison of open‐source three‐dimensional reconstruction pipelines for maize‐root phenotyping
S Liu, WP Bonelli, P Pietrzyk, A Bucksch
2023
Inclusive collaboration across plant physiology and genomics: Now is the time!
IPS Consortium
2023
OPEN leaf: an open-source cloud-based phenotyping system for tracking dynamic changes at leaf-specific resolution in Arabidopsis
A Bucksch, DG Mendoza-Cozatl
2023
Innovative use of imaging techniques within plant science
G Egea, A Bucksch, LG Thygesen
2022
3D Phenotyping and Quantitative Analysis of Peach Tree Architecture via Terrestrial Laser Scanning
J Knapp-Wilson, RB Reckziegel, A Bucksch, DJ Chavez
2022
Groundwater Level Remote Monitoring Using Optical Power Measurement in Fiber Bragg Grating
S Binder, M Yang, V Qiu, A Bucksch, M Fok
2022
Root angle in maize influences nitrogen capture and is regulated by calcineurin B‐like protein (CBL)‐interacting serine/threonine‐protein kinase 15 (ZmCIPK15)
HM Schneider, VSN Lor, MT Hanlon, A Perkins, SM Kaeppler, AN Borkar, ...
2022
Characterization of growth and development of sorghum genotypes with differential susceptibility to Striga hermonthica
D Kawa, T Taylor, B Thiombiano, Z Musa, HE Vahldick, A Walmsley, ...
2021
Root hairs vs. trichomes: Not everyone is straight!
A Roy, A Bucksch
2021
Imaging and quantitative analysis of peach tree branching index via Treeqsm
J Knapp-Wilson, RB Reckziegel, A Bucksch, D Chavez
2021
Overcoming the challenges to enhancing experimental plant biology with computational modeling
R Dale, S Oswald, A Jalihal, MF Laporte, DM Fletcher, A Hubbard, ...
2021
DIRT/3D: 3D root phenotyping for field grown maize (Zea mays)
S Liu, C Barrow, MT Hanlon, J Lynch, A Bucksch
2021
Canopy Roughness: A New Phenotypic Trait to Estimate Aboveground Biomass from Unmanned Aerial System
M Herrero-Huerta, A Bucksch, E Puttonen, KM Rainey
2020
Image‐based root phenotyping links root architecture to micronutrient concentration in cassava
N Busener, J Kengkanna, PJ Saengwilai, A Bucksch
2020
From lab to field: Open tools facilitating the translation of maize root traits
J Salungyu, S Thaitad, A Bucksch, J Kengkanna, PJ Saengwilai
2020
Architectural and anatomical responses of maize roots to agronomic practices in a semi‐arid environment
A Zhan, J Liu, S Yue, X Chen, S Li, A Bucksch
2019
Phenotypic variation of cassava root traits and their responses to drought
J Kengkanna, P Jakaew, S Amawan, N Busener, A Bucksch, ...
2019
Optical approaches to capture plant dynamics in time, space, and across scales
E Puttonen, A Bucksch, A Zlinszky, N Pfeifer
2018
COMPARING PHENOTYPIC VARIATION OF ROOT TRAITS IN THAI RICE (ORYZA SATIVA L.) ACROSS GROWING SYSTEMS.
S KLINSAWANG, M SANGACHART, P SAENGWILAI, A BUCKSCH
2018
Comparing phenotypic variation of root traits in Thai rice (Oryza sativa L.) across growing systems
P Saengwilai, S Klinsawang, M Sangachart, A Bucksch
2018
The next generation of training for Arabidopsis researchers: Bioinformatics and quantitative biology
J Friesner, SM Assmann, R Bastow, J Bailey-Serres, J Beynon, V Brendel, ...
2017
Morphological plant modeling: Unleashing geometric and topologic potential within the plant sciences
A Bucksch, A Atta-Boateng, AF Azihou, D Battogtokh, A Baumgartner, ...
2017
Reshaping plant biology: qualitative and quantitative descriptors for plant morphology
M Balduzzi, BM Binder, A Bucksch, C Chang, L Hong, AS Iyer-Pascuzzi, ...
2017
Overcoming the law of the hidden in cyberinfrastructures
A Bucksch, A Das, H Schneider, N Merchant, JS Weitz
2017
Genome-wide association mapping and agronomic impact of cowpea root architecture
JD Burridge, HM Schneider, BL Huynh, PA Roberts, A Bucksch, JP Lynch
2017
Legume shovelomics: high—throughput phenotyping of common bean (Phaseolus vulgaris L.) and cowpea (Vigna unguiculata subsp, unguiculata) root architecture in the field
J Burridge, CN Jochua, A Bucksch, JP Lynch
2016
Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics
A Das, H Schneider, J Burridge, AK Martinez Ascanio, T Wojciechowski, ...
2015
ClearedLeavesDB: an online database of cleared plant leaf images
A Das, A Bucksch, CA Price, JS Weitz
2014
Image-based high-throughput field phenotyping of crop roots
A Bucksch, J Burridge, LM York, A Das, E Nord, JS Weitz, JP Lynch
2014
A practical introduction to skeletons for the plant sciences
A Bucksch
2014
Breast Height Diameter Estimation From High-Density Airborne LiDAR Data
A Bucksch, R Lindenbergh, MZ Abd Rahman, M Menenti
2014
The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
A Bucksch, G Turk, JS Weitz
2014
High density airborne LiDAR estimation of distrupted trees induced by landslides
KA Razak, A Bucksch, M Straatsma, CJ Van Westen, RA Bakar, ...
2013
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
CN Topp, AS Iyer-Pascuzzi, JT Anderson, CR Lee, PR Zurek, ...
2013
Localized Registration of Point Clouds of Botanic Trees
A Bucksch, K Khoshelham
2013
GiA Roots: software for the high throughput analysis of plant root system architecture
T Galkovskyi, Y Mileyko, A Bucksch, B Moore, O Symonova, CA Price, ...
2012
Characterizing tree growth anomaly induced by landslides using LiDAR
KA Razak, A Bucksch, M Damen, C van Westen, M Straatsma
2011
Automated detection of branch dimensions in woody skeletons of fruit tree canopies
A Bucksch, S Fleck
2011
SkelTre: Robust skeleton extraction from imperfect point clouds
A Bucksch, R Lindenbergh, M Menenti
2010
Woody biovolume extraction from laser scanned trees
A Bucksch, S Fleck, S Rumpf, P Rademacher
2010
Applications for point cloud skeletonizations in forestry and agriculture
A Bucksch, R Lindenbergh, M Menenti
2009
Three-dimensional laser imaging as a valuable tool for specifying changes in breast shape after augmentation mammaplasty
DL Esme, A Bucksch, WH Beekman
2009
A new method for individual tree delineation and undergrowth removal from high resolution airborne LiDAR
MZA Rahman, BGH Gorte, AK Bucksch
2009
Structural monitoring of tunnels using terrestrial laser scanning
R Lindenbergh, L Uchanski, A Bucksch, R Van Gosliga
2009
CAMPINO—A skeletonization method for point cloud processing
A Bucksch, R Lindenbergh
2008
Error budget of terrestrial laser scanning: influence of the incidence angle on the scan quality
S Soudarissanane, J Van Ree, A Bucksch, R Lindenbergh
2007
Combining modern techniques for urban 3D modelling
G Pop, A Bucksch
2007
Error budget of Terrestrial Laserscanning: Influence of the intensity remission on the scan quality
A Bucksch, R Lindenbergh, J Van Ree
2007
3D building modelling based on a combination of techniques and methodologies
G Manea, AK Bucksch, BGH Gorte
2007
Combining modern techniques for urban 3D modelling
G Manea, AK Bucksch
2007
Skeletonization and segmentation of point clouds using octrees and graph theory
A Bucksch, H Appel van Wageningen
2006