3D Root Scanner  v.2

3D Root Scanner v.2

The second version of our DIY root scanner to generate 3D root models for phenomics analysis.

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3D Root Scanner v.1

3D Root Scanner v.1

Our first DIY 3D root scanner for phenomics analysis. Nick name "Monsterball".

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Plant IT

Plant IT

An open source platform to execute plant phenomics workflows on supercomputers and cyberinfrastructures.

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DIRT/3D - Reconstruction

DIRT/3D -
Reconstruction

3D reconstruction algorithm for root architectures.

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DIRT/3D - Maize Traits

DIRT/3D -
Maize Traits

Trait extraction algorithms optimized for 3D maize roots.

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DIRT/3D - Sorghum Traits

DIRT/3D -
Sorghum Traits

Trait extraction algorithms optimized for 3D sorghum roots.

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DIRT/3D - Bean Traits

DIRT/3D -
Bean Traits

Trait extraction algorithms optimized for 3D bean roots.

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DIRT/2D

DIRT/2D

The original DIRT for 2D images. Originally developed for cowpeas, maize, and beans.

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DIRT/mu

DIRT/mu

Automated analysis of root hairs from microscopy images using Ilastik output.

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DIRT/pop

DIRT/pop

Pipeline to determine root architecture types in whole field populations.

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SMART

SMART

Speedy Measurement of Arabidopsis Rossette Traits by Suxing Liu.

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Our GitHub

Our GitHub

Our GitHub repository to browse all our little helper scripts and software.

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